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🠗 Changelog
🠗 Dependencies
🠗 Provides
🠗 Files
Changelog
| Date | Author | Change |
|---|---|---|
| 2022-02-05 | Jiri Vanek <jvanek at redhat dot com> - 2.4.0-16 | - Rebuilt for java-17-openjdk as system jdk |
| 2022-01-22 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.4.0-15 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild |
| 2021-07-23 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.4.0-14 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild |
| 2021-03-30 | Jonathan Wakely <jwakely at redhat dot com> - 2.4.0-13 | - Rebuilt for removed libstdc++ symbol (#1937698) |
| 2021-01-27 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.4.0-12 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_34_Mass_Rebuild |
| 2020-08-01 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.4.0-11 | - Second attempt - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild |
| 2020-07-29 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.4.0-10 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_33_Mass_Rebuild |
Dependencies
Provides
- bundled(bzip2stream)
- bundled(zipstream)
- cmake(seqan)
- pkgconfig(seqan-2)
- seqan2-headers
- seqan2-headers(x86-64)
Files
- usr/
- include/
- seqan2/
- seqan/
- align/
- align_base.h
- align_cols.h
- align_config.h
- align_interface_wrapper.h
- align_iterator_base.h
- align_metafunctions.h
- align_traceback.h
- aligned_sequence_concept.h
- alignment_algorithm_tags.h
- alignment_operations.h
- dp_algorithm_impl.h
- dp_align_simd_helper.h
- dp_band.h
- dp_cell.h
- dp_cell_affine.h
- dp_cell_dynamic.h
- dp_cell_linear.h
- dp_context.h
- dp_formula.h
- dp_formula_affine.h
- dp_formula_dynamic.h
- dp_formula_linear.h
- dp_matrix.h
- dp_matrix_navigator.h
- dp_matrix_navigator_score_matrix.h
- dp_matrix_navigator_score_matrix_sparse.h
- dp_matrix_navigator_trace_matrix.h
- dp_matrix_sparse.h
- dp_meta_info.h
- dp_profile.h
- dp_scout.h
- dp_scout_simd.h
- dp_setup.h
- dp_trace_segment.h
- dp_traceback_adaptor.h
- dp_traceback_impl.h
- evaluate_alignment.h
- fragment.h
- gap_anchor.h
- gapped_value_type.h
- gaps_anchor.h
- gaps_array.h
- gaps_base.h
- gaps_iterator_anchor.h
- gaps_iterator_array.h
- gaps_iterator_base.h
- global_alignment_banded.h
- global_alignment_hirschberg_impl.h
- global_alignment_myers_hirschberg_impl.h
- global_alignment_myers_impl.h
- global_alignment_specialized.h
- global_alignment_unbanded.h
- local_alignment_banded.h
- local_alignment_banded_waterman_eggert_impl.h
- local_alignment_enumeration.h
- local_alignment_enumeration_banded.h
- local_alignment_enumeration_unbanded.h
- local_alignment_unbanded.h
- local_alignment_waterman_eggert_impl.h
- matrix_base.h
- align.h
- align_extend/
- align_extend.h
- align_extend_base.h
- dp_scout_xdrop.h
- align_extend.h
- align_parallel/
- async_wave_execution_interface.h
- dp_kernel_adaptor.h
- dp_parallel_execution_policies.h
- dp_parallel_scout.h
- dp_parallel_scout_simd.h
- dp_settings.h
- dp_traits.h
- parallel_align_interface.h
- wavefront_alignment_executor.h
- wavefront_alignment_result.h
- wavefront_alignment_scheduler.h
- wavefront_alignment_task.h
- wavefront_alignment_thread_local_storage.h
- wavefront_task.h
- wavefront_task_event.h
- wavefront_task_executor.h
- wavefront_task_queue.h
- wavefront_task_scheduler.h
- wavefront_task_util.h
- align_parallel.h
- align_profile/
- add_to_profile.h
- score_profile_seq.h
- align_profile.h
- align_split/
- align_split_interface.h
- dp_scout_split.h
- align_split.h
- alignment_free/
- af_d2.h
- af_d2star.h
- af_d2z.h
- af_n2.h
- alignment_free_base.h
- alignment_free_comparison.h
- kmer_functions.h
- alignment_free.h
- arg_parse/
- arg_parse_argument.h
- arg_parse_ctd_support.h
- arg_parse_doc.h
- arg_parse_exceptions.h
- arg_parse_option.h
- arg_parse_parse.h
- arg_parse_type_support.h
- arg_parse_version_check.h
- argument_parser.h
- tool_doc.h
- xml_support.h
- arg_parse.h
- bam_io/
- bam_alignment_record.h
- bam_alignment_record_util.h
- bam_file.h
- bam_header_record.h
- bam_index_bai.h
- bam_io_context.h
- bam_sam_conversion.h
- bam_scanner_cache.h
- bam_tags_dict.h
- cigar.h
- read_bam.h
- read_sam.h
- write_bam.h
- write_sam.h
- bam_io.h
- basic/
- aggregate_concept.h
- allocator_chunkpool.h
- allocator_interface.h
- allocator_multipool.h
- allocator_simple.h
- allocator_singlepool.h
- allocator_to_std.h
- alphabet_adapt_builtins.h
- alphabet_bio.h
- alphabet_concept.h
- alphabet_math.h
- alphabet_profile.h
- alphabet_qualities.h
- alphabet_residue.h
- alphabet_residue_funcs.h
- alphabet_residue_tabs.h
- alphabet_simple_type.h
- alphabet_storage.h
- array_construct_destruct.h
- basic_aggregate.h
- basic_allocator.h
- basic_alphabet.h
- basic_concept.h
- basic_container.h
- basic_debug.h
- basic_device.h
- basic_exception.h
- basic_functors.h
- basic_fundamental.h
- basic_iterator.h
- basic_math.h
- basic_metaprogramming.h
- basic_parallelism.h
- basic_proxy.h
- basic_smart_pointer.h
- basic_stream.h
- basic_tangle.h
- basic_type.h
- basic_view.h
- boost_preprocessor_subset.h
- builtin_functions.h
- concept_checking.h
- container_concept.h
- debug_helper.h
- debug_test_system.h
- fundamental_chunking.h
- fundamental_comparison.h
- fundamental_concepts.h
- fundamental_conversion.h
- fundamental_metafunctions.h
- fundamental_tags.h
- fundamental_transport.h
- holder_base.h
- holder_simple.h
- holder_tristate.h
- hosted_type_interface.h
- iterator_adapt_pointer.h
- iterator_adapt_std.h
- iterator_adaptor.h
- iterator_base.h
- iterator_concept.h
- iterator_counting.h
- iterator_interface.h
- iterator_position.h
- iterator_range.h
- iterator_zip.h
- macro_deprecated.h
- math_functions.h
- math_log_space_value.h
- metaprogramming_control.h
- metaprogramming_enable_if.h
- metaprogramming_logic.h
- metaprogramming_math.h
- metaprogramming_type.h
- metaprogramming_type_algebra.h
- pair_base.h
- pair_bit_compressed.h
- pair_packed.h
- profiling.h
- property_map_concept.h
- proxy_base.h
- proxy_iterator.h
- test_system.h
- triple_base.h
- triple_packed.h
- tuple_base.h
- tuple_bit_compressed.h
- volatile_ptr.h
- basic.h
- bed_io/
- bed_file.h
- bed_record.h
- read_bed.h
- write_bed.h
- bed_io.h
- blast/
- blast_base.h
- blast_io_context.h
- blast_record.h
- blast_report_out.h
- blast_statistics.h
- blast_tabular.h
- blast_tabular_in.h
- blast_tabular_lowlevel.h
- blast_tabular_out.h
- blast.h
- consensus/
- consensus_aligner.h
- consensus_aligner_interface.h
- consensus_alignment_options.h
- consensus_base.h
- consensus_builder.h
- consensus_library.h
- consensus_realign.h
- consensus_score.h
- overlap_info_computation.h
- overlapper.h
- consensus.h
- file/
- file_base.h
- file_cstyle.h
- file_forwards.h
- file_interface.h
- file_mapping.h
- file_page.h
- string_external.h
- string_mmap.h
- file.h
- find/
- find_abndm.h
- find_ahocorasick.h
- find_base.h
- find_begin.h
- find_bndm.h
- find_bom.h
- find_hamming_simple.h
- find_horspool.h
- find_lambda.h
- find_multi.h
- find_multiple_bfam.h
- find_multiple_shiftand.h
- find_myers_ukkonen.h
- find_pattern_base.h
- find_pex.h
- find_score.h
- find_set_horspool.h
- find_shiftand.h
- find_shiftor.h
- find_simple.h
- find_wild_shiftand.h
- find_wumanber.h
- find.h
- gff_io/
- gff_file.h
- gff_io_base.h
- gff_io.h
- graph_algorithms/
- all_pairs_shortest_path.h
- bellman_ford.h
- bipartite_matching.h
- breadth_first_search.h
- connected_components.h
- depth_first_search.h
- dijkstra.h
- floyd_warshall.h
- ford_fulkerson.h
- graph_algorithm_heap_tree.h
- graph_algorithm_hmm.h
- graph_algorithm_lis_his.h
- kruskal.h
- maximum_weighted_matching.h
- path_growing.h
- prim.h
- single_source_shortest_path.h
- strongly_connected_compnents.h
- topological_sort.h
- transitive_closure.h
- weakly_connected_components.h
- weighted_bipartite_matching.h
- graph_algorithms.h
- graph_align/
- graph_algorithm_refine_align.h
- graph_algorithm_refine_aligngraph.h
- graph_algorithm_refine_annotation.h
- graph_algorithm_refine_exact.h
- graph_algorithm_refine_exact_iterative.h
- graph_algorithm_refine_fragment.h
- graph_algorithm_refine_inexact.h
- graph_algorithm_refine_scoring.h
- graph_impl_align.h
- graph_impl_align_adapt.h
- graph_align.h
- graph_msa/
- graph_align_tcoffee_base.h
- graph_align_tcoffee_distance.h
- graph_align_tcoffee_guidetree.h
- graph_align_tcoffee_io.h
- graph_align_tcoffee_kmer.h
- graph_align_tcoffee_library.h
- graph_align_tcoffee_msa.h
- graph_align_tcoffee_progressive.h
- graph_align_tcoffee_refinement.h
- graph_msa.h
- graph_types/
- graph_base.h
- graph_drawing.h
- graph_edgestump.h
- graph_idmanager.h
- graph_impl_automaton.h
- graph_impl_directed.h
- graph_impl_hmm.h
- graph_impl_oracle.h
- graph_impl_tree.h
- graph_impl_trie.h
- graph_impl_undirected.h
- graph_impl_wordgraph.h
- graph_interface.h
- graph_iterator.h
- graph_iterator_adjacency.h
- graph_iterator_bfs.h
- graph_iterator_dfs.h
- graph_iterator_edge.h
- graph_iterator_outedge.h
- graph_iterator_vertex.h
- graph_utility_parsing.h
- property_map_generic.h
- property_map_internal.h
- property_map_internal_pointer.h
- graph_types.h
- index/
- find2_backtracking.h
- find2_base.h
- find2_functors.h
- find2_index.h
- find2_index_approx.h
- find2_index_multi.h
- find2_vstree_factory.h
- find_backtracking.h
- find_index.h
- find_index_approx.h
- find_index_binary.h
- find_index_esa.h
- find_index_lambda.h
- find_index_qgram.h
- find_pigeonhole.h
- find_quasar.h
- find_swift.h
- index_base.h
- index_bidirectional.h
- index_bidirectional_stree.h
- index_bifm.h
- index_bifm_stree.h
- index_bwt.h
- index_childtab.h
- index_device.h
- index_dfi.h
- index_esa_algs.h
- index_esa_algs_multi.h
- index_esa_base.h
- index_esa_drawing.h
- index_esa_stree.h
- index_fm.h
- index_fm_compressed_sa.h
- index_fm_compressed_sa_iterator.h
- index_fm_dox.h
- index_fm_lf_table.h
- index_fm_rank_dictionary_base.h
- index_fm_rank_dictionary_levels.h
- index_fm_rank_dictionary_naive.h
- index_fm_rank_dictionary_wt.h
- index_fm_right_array_binary_tree.h
- index_fm_right_array_binary_tree_iterator.h
- index_fm_sparse_string.h
- index_fm_stree.h
- index_forwards.h
- index_lcp.h
- index_lcp_tree.h
- index_pizzachili.h
- index_pizzachili_find.h
- index_pizzachili_string.h
- index_qgram.h
- index_qgram_bucketrefinement.h
- index_qgram_openaddressing.h
- index_qgram_stree.h
- index_sa_btree.h
- index_sa_bwtwalk.h
- index_sa_lss.h
- index_sa_mm.h
- index_sa_qsort.h
- index_sa_stree.h
- index_sa_truncated.h
- index_shawarma.h
- index_shims.h
- index_skew3.h
- index_skew7.h
- index_skew7_multi.h
- index_view.h
- index_wotd.h
- pipe_merger3.h
- pipe_merger7.h
- pizzachili_api.h
- pump_extender3.h
- pump_extender7.h
- pump_lcp_core.h
- pump_separator7.h
- radix.h
- repeat_base.h
- shape_base.h
- shape_gapped.h
- shape_minimizer.h
- shape_onegapped.h
- shape_predefined.h
- shape_threshold.h
- index.h
- journaled_set/
- journal_alignment_interface.h
- journal_alignment_traceback_adaptor.h
- journaled_set_base.h
- journaled_set_impl.h
- journaled_set_join.h
- journaled_set_join_config.h
- journaled_set_join_global_align_compact.h
- journaled_set_join_global_align_manhatten.h
- journaled_set_journal_trace_descriptor.h
- score_biaffine.h
- journaled_set.h
- journaled_string_tree/
- delta_map.h
- delta_map_entry.h
- delta_map_iterator.h
- delta_store.h
- journaled_string_tree_base.h
- journaled_string_tree_impl.h
- journaled_string_tree_sequence_buffer.h
- journaled_string_tree_traverser.h
- journaled_string_tree_traverser_node.h
- journaled_string_tree_traverser_util.h
- jst_extension_base.h
- jst_extension_horspool.h
- jst_extension_myers_ukkonen.h
- jst_extension_shiftand.h
- jst_extension_shiftor.h
- observable.h
- stack_observer.h
- journaled_string_tree.h
- map/
- map_adapter_stl.h
- map_base.h
- map_chooser.h
- map_skiplist.h
- map_vector.h
- sumlist.h
- sumlist_mini.h
- sumlist_skip.h
- map.h
- math/
- math_common_factor.h
- math_operators.h
- math_rational.h
- math.h
- misc/
- accumulators.h
- base.h
- bit_twiddling.h
- bit_twiddling_functors.h
- dequeue.h
- edit_environment.h
- interval_tree.h
- map.h
- memset.h
- name_store_cache.h
- priority_type_base.h
- priority_type_heap.h
- set.h
- svg.h
- terminal.h
- union_find.h
- modifier/
- cyclic_shape.h
- modifier_alphabet.h
- modifier_alphabet_expansion.h
- modifier_cyclic_shape.h
- modifier_functors.h
- modifier_iterator.h
- modifier_padding.h
- modifier_position.h
- modifier_reverse.h
- modifier_shortcuts.h
- modifier_string.h
- modifier_view.h
- modifier.h
- parallel/
- enumerable_thread_local.h
- enumerable_thread_local_iterator.h
- parallel_algorithms.h
- parallel_atomic_misc.h
- parallel_atomic_primitives.h
- parallel_lock.h
- parallel_macros.h
- parallel_queue.h
- parallel_queue_suspendable.h
- parallel_resource_pool.h
- parallel_sequence.h
- parallel_serializer.h
- parallel_splitting.h
- parallel_tags.h
- parallel_thread_pool.h
- parallel.h
- parse_lm/
- local_match_store.h
- parse_blastn_tabular.h
- parse_lastz_general.h
- parse_stellar_gff.h
- parse_lm.h
- pipe/
- pipe_base.h
- pipe_caster.h
- pipe_counter.h
- pipe_echoer.h
- pipe_edit_environment.h
- pipe_filter.h
- pipe_iterator.h
- pipe_joiner.h
- pipe_namer.h
- pipe_sampler.h
- pipe_shifter.h
- pipe_source.h
- pipe_tupler.h
- pool_base.h
- pool_mapper.h
- pool_sorter.h
- pipe.h
- platform.h
- random/
- random_base.h
- random_beta.h
- random_util.h
- random.h
- realign/
- realign_base.h
- realign_helper_functions.h
- realign.h
- reduced_aminoacid/
- reduced_aminoacid_base.h
- reduced_aminoacid_base_late.h
- reduced_aminoacid_buchfink11_base.h
- reduced_aminoacid_buchfink11_tables.h
- reduced_aminoacid_cannata10_base.h
- reduced_aminoacid_cannata10_tables.h
- reduced_aminoacid_cluster_red_base.h
- reduced_aminoacid_cluster_red_tables_20_to_n_b62.h
- reduced_aminoacid_cluster_red_tables_22_to_n_b62.h
- reduced_aminoacid_cluster_red_tables_24_to_n_b62.h
- reduced_aminoacid_li10_base.h
- reduced_aminoacid_li10_tables.h
- reduced_aminoacid_murphy10_base.h
- reduced_aminoacid_murphy10_tables.h
- reduced_aminoacid_murphy5_base.h
- reduced_aminoacid_murphy5_tables.h
- reduced_aminoacid_solis10_base.h
- reduced_aminoacid_solis10_tables.h
- reduced_aminoacid.h
- rna_io/
- bpseq_read_write.h
- connect_read_write.h
- dot_bracket_read_write.h
- ebpseq_read_write.h
- rna_header.h
- rna_io_context.h
- rna_record.h
- rna_struct_file.h
- stockholm_read_write.h
- vienna_read_write.h
- rna_io.h
- roi_io/
- read_roi.h
- roi_file.h
- roi_io_context.h
- roi_record.h
- write_roi.h
- roi_io.h
- score/
- score_base.h
- score_edit.h
- score_matrix.h
- score_matrix_data.h
- score_matrix_dyn.h
- score_matrix_io.h
- score_simd_wrapper.h
- score_simple.h
- score.h
- seeds/
- banded_chain_alignment.h
- banded_chain_alignment_impl.h
- banded_chain_alignment_profile.h
- banded_chain_alignment_scout.h
- banded_chain_alignment_traceback.h
- basic_iter_indirect.h
- seeds_base.h
- seeds_combination.h
- seeds_extension.h
- seeds_global_chaining.h
- seeds_global_chaining_base.h
- seeds_global_chaining_gusfield.h
- seeds_seed_base.h
- seeds_seed_chained.h
- seeds_seed_diagonal.h
- seeds_seed_set_base.h
- seeds_seed_set_non_scored.h
- seeds_seed_set_scored.h
- seeds_seed_set_unordered.h
- seeds_seed_simple.h
- seeds.h
- seq_io/
- bam_sam.h
- fai_index.h
- fasta_fastq.h
- genomic_region.h
- read_embl.h
- read_genbank.h
- sequence_file.h
- seq_io.h
- sequence/
- adapt_array_pointer.h
- adapt_stl_container.h
- container_view.h
- container_view_zip.h
- iter_concat_virtual.h
- segment_base.h
- segment_infix.h
- segment_prefix.h
- segment_suffix.h
- segment_utils.h
- sequence_concatenator.h
- sequence_forwards.h
- sequence_interface.h
- sequence_lexical.h
- sequence_shortcuts.h
- string_alloc.h
- string_array.h
- string_base.h
- string_block.h
- string_cstyle.h
- string_packed.h
- string_packed_old.h
- string_set_base.h
- string_set_concat_direct.h
- string_set_dependent_generous.h
- string_set_dependent_tight.h
- string_set_owner.h
- string_set_segment.h
- string_set_view.h
- sequence.h
- sequence_journaled/
- journal_entries_sorted_array.h
- journal_entry.h
- sequence_journaled.h
- sequence_journaled_iterator.h
- sequence_journaled_iterator_fast.h
- sequence_journaled.h
- simd/
- simd_base.h
- simd_base_seqan_impl.h
- simd_base_seqan_impl_avx2.h
- simd_base_seqan_impl_avx512.h
- simd_base_seqan_impl_sse4.2.h
- simd_base_seqan_interface.h
- simd_base_umesimd_impl.h
- simd.h
- simple_intervals_io/
- simple_intervals_file.h
- simple_intervals_io.h
- simple_intervals_io.h
- statistics/
- statistics_base.h
- statistics_markov_model.h
- statistics.h
- store/
- store_align.h
- store_align_intervals.h
- store_all.h
- store_annotation.h
- store_base.h
- store_contig.h
- store_intervaltree.h
- store_io.h
- store_io_gff.h
- store_io_sam.h
- store_io_ucsc.h
- store_library.h
- store_matepair.h
- store_read.h
- store.h
- stream/
- adapt_ios.h
- buffered_stream.h
- file_stream.h
- formatted_file.h
- guess_format.h
- iostream_bgzf.h
- iostream_bzip2.h
- iostream_bzip2_impl.h
- iostream_zip.h
- iostream_zip_impl.h
- iostream_zutil.h
- iter_stream.h
- lexical_cast.h
- stream_base.h
- stream_compressor.h
- tokenization.h
- virtual_stream.h
- stream.h
- system/
- file_async.h
- file_directory.h
- file_forwards.h
- file_sync.h
- system_base.h
- system_event_win.h
- system_forwards.h
- system.h
- tabix_io/
- tabix_index_tbi.h
- tabix_io.h
- translation/
- translation.h
- translation_tables.h
- translation.h
- ucsc_io/
- ucsc_file.h
- ucsc_io.h
- ucsc_record.h
- ucsc_io.h
- vcf_io/
- read_vcf.h
- vcf_file.h
- vcf_header.h
- vcf_header_record.h
- vcf_io_context.h
- vcf_record.h
- write_vcf.h
- vcf_io.h
- version.h
- align/
- seqan/
- seqan2/
- lib64/
- cmake/
- seqan2/
- seqan-config.cmake
- seqan2/
- pkgconfig/
- seqan-2.pc
- cmake/
- share/
- doc/
- seqan2-headers/
- CHANGELOG.rst
- README.rst
- seqan2-headers/
- licenses/
- seqan2-headers/
- LICENSE
- seqan2-headers/
- doc/
- include/
Sources on Pagure