python3-ProDy-2.2.0-3.fc37 in Fedora Rawhide
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🠗 Changelog
🠗 Dependencies
🠗 Provides
🠗 Files
Changelog
| Date | Author | Change |
|---|---|---|
| 2022-06-15 | Python Maint <python dash maint at redhat dot com> - 2.2.0-3 | - Rebuilt for Python 3.11 |
| 2022-05-25 | Antonio Trande <sagitter at fedoraproject dot org> - 2.2.0-2 | - Do not restrict to Biopython<=1.76 |
| 2022-05-22 | Antonio Trande <sagitter at fedoraproject dot org> - 2.2.0-1 | - Release 2.2.0 |
| 2022-04-29 | Antonio Trande <sagitter at fedoraproject dot org> - 2.1.2-1 | - Release 2.1.2 |
| 2022-04-19 | Antonio Trande <sagitter at fedoraproject dot org> - 2.1.1-1 | - Release 2.1.1 |
| 2022-04-15 | Antonio Trande <sagitter at fedoraproject dot org> - 2.1.0-1 | - Release 2.1.0 |
| 2022-02-17 | Antonio Trande <sagitter at fedoraproject dot org> - 2.0.2-1 | - Release 2.0.2 |
| 2022-01-19 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.0.1-2 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_36_Mass_Rebuild |
| 2021-12-23 | Antonio Trande <sagitter at fedoraproject dot org> - 2.0.1-1 | - Release 2.0.1 - Remove Python instructions |
| 2021-07-21 | Fedora Release Engineering <releng at fedoraproject dot org> - 2.0-3 | - Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild |
Dependencies
Provides
- ProDy
- python-ProDy
- python3-ProDy
- python3-ProDy(x86-64)
- python3.11-ProDy
- python3.11dist(prody)
- python3dist(prody)
Files
- usr/
- bin/
- evol
- evol-3.11
- prody
- prody-3.11
- python3.11-evol
- python3.11-prody
- lib/
- .build-id/
- 14/
- c77a8ab6d0f6959cde506e8664e45621011a3e
- 1e/
- a4e3dcbadaa5aea903046a6043ebd04936abf7
- 63/
- 44e1346ad60df9186bf58ec7989659edc49e3c
- b4/
- 50f65463954f61caddb366f2dbe0616c65d458
- d3/
- 449bdc56f2b9802173044f5d581d6896d62636
- d7/
- fd1323f2a0b6cac1f644415f3b6d52c86a7bba
- f6/
- 5d69e1a6c9f2640112cbb7b55e0123f5d2489c
- 14/
- .build-id/
- lib64/
- python3.11/
- site-packages/
- ProDy-2.2.0-py3.11.egg-info/
- PKG-INFO
- SOURCES.txt
- dependency_links.txt
- entry_points.txt
- requires.txt
- top_level.txt
- prody/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- apps/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- apptools.cpython-311.opt-1.pyc
- apptools.cpython-311.pyc
- apptools.py
- evol_apps/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- evol_coevol.cpython-311.opt-1.pyc
- evol_coevol.cpython-311.pyc
- evol_conserv.cpython-311.opt-1.pyc
- evol_conserv.cpython-311.pyc
- evol_fetch.cpython-311.opt-1.pyc
- evol_fetch.cpython-311.pyc
- evol_filter.cpython-311.opt-1.pyc
- evol_filter.cpython-311.pyc
- evol_merge.cpython-311.opt-1.pyc
- evol_merge.cpython-311.pyc
- evol_occupancy.cpython-311.opt-1.pyc
- evol_occupancy.cpython-311.pyc
- evol_rankorder.cpython-311.opt-1.pyc
- evol_rankorder.cpython-311.pyc
- evol_refine.cpython-311.opt-1.pyc
- evol_refine.cpython-311.pyc
- evol_search.cpython-311.opt-1.pyc
- evol_search.cpython-311.pyc
- evol_coevol.py
- evol_conserv.py
- evol_fetch.py
- evol_filter.py
- evol_merge.py
- evol_occupancy.py
- evol_rankorder.py
- evol_refine.py
- evol_search.py
- prody_apps/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- nmaoptions.cpython-311.opt-1.pyc
- nmaoptions.cpython-311.pyc
- prody_align.cpython-311.opt-1.pyc
- prody_align.cpython-311.pyc
- prody_anm.cpython-311.opt-1.pyc
- prody_anm.cpython-311.pyc
- prody_biomol.cpython-311.opt-1.pyc
- prody_biomol.cpython-311.pyc
- prody_blast.cpython-311.opt-1.pyc
- prody_blast.cpython-311.pyc
- prody_catdcd.cpython-311.opt-1.pyc
- prody_catdcd.cpython-311.pyc
- prody_contacts.cpython-311.opt-1.pyc
- prody_contacts.cpython-311.pyc
- prody_eda.cpython-311.opt-1.pyc
- prody_eda.cpython-311.pyc
- prody_fetch.cpython-311.opt-1.pyc
- prody_fetch.cpython-311.pyc
- prody_gnm.cpython-311.opt-1.pyc
- prody_gnm.cpython-311.pyc
- prody_pca.cpython-311.opt-1.pyc
- prody_pca.cpython-311.pyc
- prody_select.cpython-311.opt-1.pyc
- prody_select.cpython-311.pyc
- nmaoptions.py
- prody_align.py
- prody_anm.py
- prody_biomol.py
- prody_blast.py
- prody_catdcd.py
- prody_contacts.py
- prody_eda.py
- prody_fetch.py
- prody_gnm.py
- prody_pca.py
- prody_select.py
- atomic/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- acceptor.cpython-311.opt-1.pyc
- acceptor.cpython-311.pyc
- angle.cpython-311.opt-1.pyc
- angle.cpython-311.pyc
- atom.cpython-311.opt-1.pyc
- atom.cpython-311.pyc
- atomgroup.cpython-311.opt-1.pyc
- atomgroup.cpython-311.pyc
- atomic.cpython-311.opt-1.pyc
- atomic.cpython-311.pyc
- atommap.cpython-311.opt-1.pyc
- atommap.cpython-311.pyc
- bond.cpython-311.opt-1.pyc
- bond.cpython-311.pyc
- chain.cpython-311.opt-1.pyc
- chain.cpython-311.pyc
- crossterm.cpython-311.opt-1.pyc
- crossterm.cpython-311.pyc
- dihedral.cpython-311.opt-1.pyc
- dihedral.cpython-311.pyc
- donor.cpython-311.opt-1.pyc
- donor.cpython-311.pyc
- fields.cpython-311.opt-1.pyc
- fields.cpython-311.pyc
- flags.cpython-311.opt-1.pyc
- flags.cpython-311.pyc
- functions.cpython-311.opt-1.pyc
- functions.cpython-311.pyc
- hierview.cpython-311.opt-1.pyc
- hierview.cpython-311.pyc
- improper.cpython-311.opt-1.pyc
- improper.cpython-311.pyc
- nbexclusion.cpython-311.opt-1.pyc
- nbexclusion.cpython-311.pyc
- pointer.cpython-311.opt-1.pyc
- pointer.cpython-311.pyc
- residue.cpython-311.opt-1.pyc
- residue.cpython-311.pyc
- segment.cpython-311.opt-1.pyc
- segment.cpython-311.pyc
- select.cpython-311.opt-1.pyc
- select.cpython-311.pyc
- selection.cpython-311.opt-1.pyc
- selection.cpython-311.pyc
- subset.cpython-311.opt-1.pyc
- subset.cpython-311.pyc
- acceptor.py
- angle.py
- atom.py
- atomgroup.py
- atomic.py
- atommap.py
- bond.py
- chain.py
- crossterm.py
- dihedral.py
- donor.py
- fields.py
- flags.py
- functions.py
- hierview.py
- improper.py
- nbexclusion.py
- pointer.py
- residue.py
- segment.py
- select.py
- selection.py
- subset.py
- chromatin/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- cluster.cpython-311.opt-1.pyc
- cluster.cpython-311.pyc
- functions.cpython-311.opt-1.pyc
- functions.cpython-311.pyc
- hic.cpython-311.opt-1.pyc
- hic.cpython-311.pyc
- norm.cpython-311.opt-1.pyc
- norm.cpython-311.pyc
- straw.cpython-311.opt-1.pyc
- straw.cpython-311.pyc
- cluster.py
- functions.py
- hic.py
- norm.py
- straw.py
- compounds/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- bird.cpython-311.opt-1.pyc
- bird.cpython-311.pyc
- ccd.cpython-311.opt-1.pyc
- ccd.cpython-311.pyc
- functions.cpython-311.opt-1.pyc
- functions.cpython-311.pyc
- pdbligands.cpython-311.opt-1.pyc
- pdbligands.cpython-311.pyc
- bird.py
- ccd.py
- functions.py
- pdbligands.py
- database/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- cath.cpython-311.opt-1.pyc
- cath.cpython-311.pyc
- dali.cpython-311.opt-1.pyc
- dali.cpython-311.pyc
- goa.cpython-311.opt-1.pyc
- goa.cpython-311.pyc
- pfam.cpython-311.opt-1.pyc
- pfam.cpython-311.pyc
- quartataweb.cpython-311.opt-1.pyc
- quartataweb.cpython-311.pyc
- uniprot.cpython-311.opt-1.pyc
- uniprot.cpython-311.pyc
- cath.py
- dali.py
- goa.py
- pfam.py
- quartataweb.py
- uniprot.py
- domain_decomposition/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- spectrus.cpython-311.opt-1.pyc
- spectrus.cpython-311.pyc
- spectrus.py
- dynamics/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- adaptive.cpython-311.opt-1.pyc
- adaptive.cpython-311.pyc
- analysis.cpython-311.opt-1.pyc
- analysis.cpython-311.pyc
- anm.cpython-311.opt-1.pyc
- anm.cpython-311.pyc
- bbenm.cpython-311.opt-1.pyc
- bbenm.cpython-311.pyc
- clustenm.cpython-311.opt-1.pyc
- clustenm.cpython-311.pyc
- compare.cpython-311.opt-1.pyc
- compare.cpython-311.pyc
- editing.cpython-311.opt-1.pyc
- editing.cpython-311.pyc
- entropy.cpython-311.opt-1.pyc
- entropy.cpython-311.pyc
- essa.cpython-311.opt-1.pyc
- essa.cpython-311.pyc
- exanm.cpython-311.opt-1.pyc
- exanm.cpython-311.pyc
- exgnm.cpython-311.opt-1.pyc
- exgnm.cpython-311.pyc
- functions.cpython-311.opt-1.pyc
- functions.cpython-311.pyc
- gamma.cpython-311.opt-1.pyc
- gamma.cpython-311.pyc
- gnm.cpython-311.opt-1.pyc
- gnm.cpython-311.pyc
- heatmapper.cpython-311.opt-1.pyc
- heatmapper.cpython-311.pyc
- imanm.cpython-311.opt-1.pyc
- imanm.cpython-311.pyc
- mechstiff.cpython-311.opt-1.pyc
- mechstiff.cpython-311.pyc
- mode.cpython-311.opt-1.pyc
- mode.cpython-311.pyc
- modeset.cpython-311.opt-1.pyc
- modeset.cpython-311.pyc
- nma.cpython-311.opt-1.pyc
- nma.cpython-311.pyc
- nmdfile.cpython-311.opt-1.pyc
- nmdfile.cpython-311.pyc
- pca.cpython-311.opt-1.pyc
- pca.cpython-311.pyc
- perturb.cpython-311.opt-1.pyc
- perturb.cpython-311.pyc
- plotting.cpython-311.opt-1.pyc
- plotting.cpython-311.pyc
- rtb.cpython-311.opt-1.pyc
- rtb.cpython-311.pyc
- sampling.cpython-311.opt-1.pyc
- sampling.cpython-311.pyc
- signature.cpython-311.opt-1.pyc
- signature.cpython-311.pyc
- vmdfile.cpython-311.opt-1.pyc
- vmdfile.cpython-311.pyc
- adaptive.py
- analysis.py
- anm.py
- bbenm.py
- clustenm.py
- compare.py
- editing.py
- entropy.py
- essa.py
- exanm.py
- exgnm.py
- functions.py
- gamma.py
- gnm.py
- heatmapper.py
- imanm.py
- mechstiff.py
- mode.py
- modeset.py
- nma.py
- nmdfile.py
- pca.py
- perturb.py
- plotting.py
- rtb.py
- rtbtools.cpython-311-x86_64-linux-gnu.so
- sampling.py
- signature.py
- smtools.cpython-311-x86_64-linux-gnu.so
- vmdfile.py
- ensemble/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- conformation.cpython-311.opt-1.pyc
- conformation.cpython-311.pyc
- ensemble.cpython-311.opt-1.pyc
- ensemble.cpython-311.pyc
- functions.cpython-311.opt-1.pyc
- functions.cpython-311.pyc
- pdbensemble.cpython-311.opt-1.pyc
- pdbensemble.cpython-311.pyc
- conformation.py
- ensemble.py
- functions.py
- pdbensemble.py
- kdtree/
- _CKDTree.cpython-311-x86_64-linux-gnu.so
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- kdtree.cpython-311.opt-1.pyc
- kdtree.cpython-311.pyc
- kdtree.py
- measure/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- contacts.cpython-311.opt-1.pyc
- contacts.cpython-311.pyc
- measure.cpython-311.opt-1.pyc
- measure.cpython-311.pyc
- transform.cpython-311.opt-1.pyc
- transform.cpython-311.pyc
- contacts.py
- measure.py
- transform.py
- proteins/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- blastpdb.cpython-311.opt-1.pyc
- blastpdb.cpython-311.pyc
- ciffile.cpython-311.opt-1.pyc
- ciffile.cpython-311.pyc
- cifheader.cpython-311.opt-1.pyc
- cifheader.cpython-311.pyc
- compare.cpython-311.opt-1.pyc
- compare.cpython-311.pyc
- dssp.cpython-311.opt-1.pyc
- dssp.cpython-311.pyc
- emdfile.cpython-311.opt-1.pyc
- emdfile.cpython-311.pyc
- functions.cpython-311.opt-1.pyc
- functions.cpython-311.pyc
- header.cpython-311.opt-1.pyc
- header.cpython-311.pyc
- localpdb.cpython-311.opt-1.pyc
- localpdb.cpython-311.pyc
- pdbclusters.cpython-311.opt-1.pyc
- pdbclusters.cpython-311.pyc
- pdbfile.cpython-311.opt-1.pyc
- pdbfile.cpython-311.pyc
- starfile.cpython-311.opt-1.pyc
- starfile.cpython-311.pyc
- stride.cpython-311.opt-1.pyc
- stride.cpython-311.pyc
- wwpdb.cpython-311.opt-1.pyc
- wwpdb.cpython-311.pyc
- blastpdb.py
- ccealign.cpython-311-x86_64-linux-gnu.so
- ciffile.py
- cifheader.py
- compare.py
- dssp.py
- emdfile.py
- functions.py
- header.py
- localpdb.py
- pdbclusters.py
- pdbfile.py
- starfile.py
- stride.py
- wwpdb.py
- sequence/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- analysis.cpython-311.opt-1.pyc
- analysis.cpython-311.pyc
- msa.cpython-311.opt-1.pyc
- msa.cpython-311.pyc
- msafile.cpython-311.opt-1.pyc
- msafile.cpython-311.pyc
- plotting.cpython-311.opt-1.pyc
- plotting.cpython-311.pyc
- sequence.cpython-311.opt-1.pyc
- sequence.cpython-311.pyc
- analysis.py
- msa.py
- msafile.py
- msaio.cpython-311-x86_64-linux-gnu.so
- msatools.cpython-311-x86_64-linux-gnu.so
- plotting.py
- seqtools.cpython-311-x86_64-linux-gnu.so
- sequence.py
- tests/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- apps/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- test_prody_anm.cpython-311.opt-1.pyc
- test_prody_anm.cpython-311.pyc
- test_prody_catdcd.cpython-311.opt-1.pyc
- test_prody_catdcd.cpython-311.pyc
- test_prody_examples.cpython-311.opt-1.pyc
- test_prody_examples.cpython-311.pyc
- test_prody_gnm.cpython-311.opt-1.pyc
- test_prody_gnm.cpython-311.pyc
- test_prody_pca.cpython-311.opt-1.pyc
- test_prody_pca.cpython-311.pyc
- test_prody_anm.py
- test_prody_catdcd.py
- test_prody_examples.py
- test_prody_gnm.py
- test_prody_pca.py
- atomic/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- test_atomic.cpython-311.opt-1.pyc
- test_atomic.cpython-311.pyc
- test_atommap.cpython-311.opt-1.pyc
- test_atommap.cpython-311.pyc
- test_fragment.cpython-311.opt-1.pyc
- test_fragment.cpython-311.pyc
- test_hierview.cpython-311.opt-1.pyc
- test_hierview.cpython-311.pyc
- test_select.cpython-311.opt-1.pyc
- test_select.cpython-311.pyc
- test_subset.cpython-311.opt-1.pyc
- test_subset.cpython-311.pyc
- test_atomic.py
- test_atommap.py
- test_fragment.py
- test_hierview.py
- test_select.py
- test_subset.py
- datafiles/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- anm1ubi_evalues.dat
- anm1ubi_hessian.coo
- anm1ubi_vectors.dat
- commute1ubi.dat
- dcd2k39_truncated.dcd
- exanm2nwl_evalues.dat
- exanm2nwl_hessian.coo
- exanm2nwl_vectors.dat
- gnm1ubi_evalues.dat
- gnm1ubi_kirchhoff.coo
- gnm1ubi_vectors.dat
- hit1ubi.dat
- msa_Cys_knot.fasta
- msa_Cys_knot.slx
- msa_Cys_knot.sth
- msa_Cys_knot_di.dat
- msa_Cys_knot_sca.dat
- pca2k39_cov.coo
- pca2k39_evalues.dat
- pca2k39_vectors.dat
- pdb1ejg.pdb
- pdb1ejg_oneatom.pdb
- pdb1r19_dssp.pdb
- pdb1tw7_step3_charmm2namd.pdb
- pdb1tw7_step3_charmm2namd_doubled_h36.pdb
- pdb1tw7_step3_charmm2namd_doubled_hex.pdb
- pdb1ubi.pdb
- pdb1ubi_ca.pdb
- pdb2gb1_truncated.pdb
- pdb2k39_ca.pdb
- pdb2k39_truncated.pdb
- pdb2nwl-opm.pdb
- pdb3mht.pdb
- pdbRTER.pdb
- rtb2gb1_hessian.coo
- rtb2gb1_project.coo
- xmlSTI.xml
- dynamics/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- test_editing.cpython-311.opt-1.pyc
- test_editing.cpython-311.pyc
- test_enms.cpython-311.opt-1.pyc
- test_enms.cpython-311.pyc
- test_pca.cpython-311.opt-1.pyc
- test_pca.cpython-311.pyc
- test_signature.cpython-311.opt-1.pyc
- test_signature.cpython-311.pyc
- test_editing.py
- test_enms.py
- test_pca.py
- test_signature.py
- ensemble/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- test_conformation.cpython-311.opt-1.pyc
- test_conformation.cpython-311.pyc
- test_ensemble.cpython-311.opt-1.pyc
- test_ensemble.cpython-311.pyc
- test_functions.cpython-311.opt-1.pyc
- test_functions.cpython-311.pyc
- test_pdbensemble.cpython-311.opt-1.pyc
- test_pdbensemble.cpython-311.pyc
- test_conformation.py
- test_ensemble.py
- test_functions.py
- test_pdbensemble.py
- kdtree/
- __init__.py
- __pycache__/
- __init__.cpython-311.opt-1.pyc
- __init__.cpython-311.pyc
- test_kdtree.cpython-311.opt-1.pyc
- test_kdtree.cpython-311.pyc
- test_kdtree.py
- measure/
- __init__.py
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